%% The BibTeX file generated by www.zannavi.com/sangkil/biblio %% All citations containing “molecular dynamics” @article{Murphy14, author={Brendan Murphy and Timur Osipov and Zoltan Jurek and Li Fang and Sang-Kil Son and Melanie Mucke and John H. D. Eland and Vitali Zhaunerchyk and Raimund Feifel and Lorenzo Avaldi and Paola Bolognesi and Christoph Bostedt and J. D. Bozek and Jakob Grilj and Markus Guehr and Leszek J. Frasinski and James Glownia and Dang Trinh Ha and Kay Hoffmann and Edwin Kukk and Brian K. McFarland and Catalin Miron and Emily Sistrunk and Richard J. Squibb and Kiyoshi Ueda and Robin Santra and Nora Berrah}, title={Femtosecond x-ray-induced explosion of {C}$_{60}$ at extreme intensity}, journal={Nat. Commun.}, volume={5}, pages={4281}, year={2014}, keywords={C60; molecular dynamics; LCLS; experiment; XFEL; XMDYN; XATOM; CFEL; DESY;}, url={https://doi.org/10.1038/ncomms5281}, doi={10.1038/ncomms5281} } @conference{Hanasaki15, author={Kota Hanasaki and Oriol Vendrell and Sang-Kil Son and Ludger Inhester and Yajiang Hao and Robin Santra}, title={Formulation of non-adiabatic molecular dynamics triggered by core ionization}, year={2015}, month={July 12-17}, booktitle={The Hamburg Conference on Femtochemistry}, address={Hamburg, Germany}, keywords={XMOLECULE; non-adiabatic; molecular dynamics; MD; surface hopping; SH; CFEL; DESY;}, url={https://www.femto12.org} } @article{Tachibana15, author={Tetsuya Tachibana and Zoltan Jurek and Hironobu Fukuzawa and Koji Motomura and Kiyonobu Nagaya and Shin-ichi Wada and Per Johnsson and Marco Siano and S. Mondal and Yuta Ito and M. Kimura and T. Sakai and K. Matsunami and H. Hayashita and J. Kajikawa and Xiao-Jing Liu and E. Robert and Catalin Miron and Raimund Feifel and John P. Marangos and Kensuke Tono and Yuichi Inubushi and Makina Yabashi and Sang-Kil Son and Beata Ziaja and Makoto Yao and Robin Santra and Kiyoshi Ueda}, title={Nanoplasma formation by high intensity hard x-rays}, journal={Sci. Rep.}, volume={5}, pages={10977}, year={2015}, keywords={Ar; Xe; cluster; molecular dynamics; SACLA; experiment; XFEL; XMDYN; XATOM; CFEL; DESY;}, url={https://doi.org/10.1038/srep10977}, doi={10.1038/srep10977} } @article{Ziaja15, author={Beata Ziaja and Zoltan Jurek and Nikita Medvedev and Vikrant Saxena and Sang-Kil Son and Robin Santra}, title={Towards realistic simulations of macromolecules irradiated under the conditions of coherent diffraction imaging with an x-ray free-electron laser}, journal={Photonics}, volume={2}, pages={256--269}, year={2015}, keywords={molecular imaging; single particle imaging; molecular dynamics; radiation damage; XFEL; XMDYN; XATOM; CFEL; DESY;}, url={https://doi.org/10.3390/photonics2010256}, doi={10.3390/photonics2010256} } @article{Rudenko17, author={Artem Rudenko and Ludger Inhester and Kota Hanasaki and Xiang Li and Seyyed J. Robatjazi and Benjamin Erk and Rebecca Boll and Koudai Toyota and Yajiang Hao and Oriol Vendrell and Cedric Bomme and Evgeny Savelyev and Benedikt Rudek and Lutz Foucar and Stephen H. Southworth and Carl S. Lehmann and Bertold Kr{\"a}ssig and Tatiana Marchenko and Marc Simon and Kiyoshi Ueda and Ken R. Ferguson and Maximilian Bucher and Tais Gorkhover and Sebastian Carron and Roberto Alonso-Mori and Jason E. Koglin and Jonathan Correa and Garth J. Williams and S{\'e}bastien Boutet and Linda Young and Christoph Bostedt and Sang-Kil Son and Robin Santra and Daniel Rolles}, title={Femtosecond response of polyatomic molecules to ultra-intense hard X-rays}, journal={Nature}, volume={546}, pages={129--132}, year={2017}, keywords={CH3I; ultrafast; ionization; fragmentation; charge rearrangement; charge transfer; coulomb explosion; x-ray explosion dynamics; x-ray multiphoton ionization; MD; molecular dynamics; MMID; CREXIM; XMOLECULE; LCLS; experiment; XFEL; CFEL; DESY;}, url={http://rdcu.be/s8vR}, doi={10.1038/nature22373} }