%% The BibTeX file generated by www.zannavi.com/sangkil/biblio
%% All publications  containing “XMDYN”

@article{Murphy14,
    author={Brendan Murphy and Timur Osipov and Zoltan Jurek and Li Fang and Sang-Kil Son and Melanie Mucke and John H. D. Eland and Vitali Zhaunerchyk and Raimund Feifel and Lorenzo Avaldi and Paola Bolognesi and Christoph Bostedt and J. D. Bozek and Jakob Grilj and Markus Guehr and Leszek J. Frasinski and James Glownia and Dang Trinh Ha and Kay Hoffmann and Edwin Kukk and Brian K. McFarland and Catalin Miron and Emily Sistrunk and Richard J. Squibb and Kiyoshi Ueda and Robin Santra and Nora Berrah},
    title={Femtosecond x-ray-induced explosion of {C}$_{60}$ at extreme intensity},
    journal={Nat. Commun.},
    volume={5},
    pages={4281},
    year={2014},
    keywords={C60; molecular dynamics; LCLS; experiment; XFEL; XMDYN; XATOM; CFEL; DESY;},
    url={https://doi.org/10.1038/ncomms5281},
    doi={10.1038/ncomms5281}
}

@article{Tachibana15,
    author={Tetsuya Tachibana and Zoltan Jurek and Hironobu Fukuzawa and Koji Motomura and Kiyonobu Nagaya and Shin-ichi Wada and Per Johnsson and Marco Siano and S. Mondal and Yuta Ito and M. Kimura and T. Sakai and K. Matsunami and H. Hayashita and J. Kajikawa and Xiao-Jing Liu and E. Robert and Catalin Miron and Raimund Feifel and John P. Marangos and Kensuke Tono and Yuichi Inubushi and Makina Yabashi and Sang-Kil Son and Beata Ziaja and Makoto Yao and Robin Santra and Kiyoshi Ueda},
    title={Nanoplasma formation by high intensity hard x-rays},
    journal={Sci. Rep.},
    volume={5},
    pages={10977},
    year={2015},
    keywords={Ar; Xe; cluster; molecular dynamics; SACLA; experiment; XFEL; XMDYN; XATOM; CFEL; DESY;},
    url={https://doi.org/10.1038/srep10977},
    doi={10.1038/srep10977}
}

@article{Ziaja15,
    author={Beata Ziaja and Zoltan Jurek and Nikita Medvedev and Vikrant Saxena and Sang-Kil Son and Robin Santra},
    title={Towards realistic simulations of macromolecules irradiated under the conditions of coherent diffraction imaging with an x-ray free-electron laser},
    journal={Photonics},
    volume={2},
    pages={256--269},
    year={2015},
    keywords={molecular imaging; single particle imaging; molecular dynamics; radiation damage; XFEL; XMDYN; XATOM; CFEL; DESY;},
    url={https://doi.org/10.3390/photonics2010256},
    doi={10.3390/photonics2010256}
}

@article{Abdullah16,
    author={Malik Muhammad Abdullah and Zoltan Jurek and Sang-Kil Son and Robin Santra},
    title={Calculation of x-ray scattering patterns from nanocrystals at high x-ray intensity},
    journal={Struct. Dyn.},
    volume={3},
    pages={054101},
    year={2016},
    keywords={XATOM; XMDYN; XSINC; CFEL; DESY; x-ray scattering; x-ray diffraction; nanocrystal; molecular imaging;},
    url={https://doi.org/10.1063/1.4958887},
    doi={10.1063/1.4958887}
}

@article{Jurek16,
    author={Zoltan Jurek and Sang-Kil Son and Beata Ziaja and Robin Santra},
    title={{XMDYN} and {XATOM}: versatile simulation tools for quantitative modeling of X-ray free-electron laser induced dynamics of matter},
    journal={J. Appl. Cryst.},
    volume={49},
    pages={1048--1056},
    year={2016},
    keywords={XATOM; XMDYN; XFEL; CFEL; DESY;},
    note={special issue on free-electron laser software},
    url={https://doi.org/10.1107/S1600576716006014},
    doi={10.1107/S1600576716006014}
}

@article{Abdullah17,
    author={Malik Muhammad Abdullah and Anurag and Zoltan Jurek and Sang-Kil Son and Robin Santra},
    title={Molecular-dynamics approach for studying the nonequilibrium behavior of x-ray-heated solid-density matter},
    journal={Phys. Rev. E},
    volume={96},
    pages={023205},
    year={2017},
    keywords={XATOM; XMDYN; average-atom; plasma; thermalization; CFEL; DESY;},
    url={https://doi.org/10.1103/PhysRevE.96.023205},
    doi={10.1103/PhysRevE.96.023205}
}

@article{Abdullah18a,
    author={Malik Muhammad Abdullah and Sang-Kil Son and Zoltan Jurek and Robin Santra},
    title={Towards the theoretical limitations of x-ray nanocrystallography at high intensity: the validity of the effective-form-factor description},
    journal={IUCrJ},
    volume={5},
    pages={699--705},
    year={2018},
    keywords={XATOM; XMDYN; XSINC; nanocrystal; SFX; radiation damage; MAD; x-ray crystallography; x-ray diffraction; x-ray scattering; CFEL; DESY;},
    url={https://doi.org/10.1107/S2052252518011442},
    doi={10.1107/S2052252518011442}
}

@article{Kumagai18,
    author={Yoshiaki Kumagai and Zoltan Jurek and Weiqing Xu and Hironobu Fukuzawa and Koji Motomura and Denys Iablonskyi and Kiyonobu Nagaya and Shin-ichi Wada and Subhendu Mondal and Tetsuya Tachibana and Yuta Ito and Tsukasa Sakai and Kenji Matsunami and Toshiyuki Nishiyama and Takayuki Umemoto and Christophe Nicolas and Catalin Miron and Tadashi Togashi and Kanade Ogawa and Shigeki Owada and Kensuke Tono and Makina Yabashi and Sang-Kil Son and Beata Ziaja and Robin Santra and Kiyoshi Ueda},
    title={Radiation-induced chemical dynamics in {Ar} clusters exposed to strong x-ray pulses},
    journal={Phys. Rev. Lett.},
    volume={120},
    pages={223201},
    year={2018},
    keywords={XMDYN; Ar; cluster; SACLA; experiment; CFEL; DESY;},
    url={https://doi.org/10.1103/PhysRevLett.120.223201},
    doi={10.1103/PhysRevLett.120.223201}
}

@article{Berrah19,
    author={Nora Berrah and Alvaro Sanchez-Gonzalez and Zoltan Jurek and Razib Obaid and Hui Xiong and Richard J. Squibb and Timur Osipov and Alberto Lutman and Li Fang and Thomas Barillot and John D. Bozek and James Cryan and Thomas J. A. Wolf and Daniel Rolles and Ryan Coffee and Kirsten Schnorr and Sven Augustin and Hironobu Fukuzawa and Koji Motomura and N. Niebuhr and Leszek J. Frasinski and Raimund Feifel and Claus P. Schulz and Koudai Toyota and Sang-Kil Son and Kiyoshi Ueda and Thomas Pfeifer and Jon P. Marangos and Robin Santra},
    title={Femtosecond-resolved observation of the fragmentation of buckminsterfullerene following X-ray multiphoton ionization},
    journal={Nat. Phys.},
    volume={15},
    pages={1279--1283},
    year={2019},
    keywords={C60; XMDYN; experiment; pump-probe; fragmentation; ultrafast; LCLS; CFEL; DESY;},
    url={https://doi.org/10.1038/s41567-019-0665-7},
    doi={10.1038/s41567-019-0665-7}
}

@article{Kumagai20,
    author={Yoshiaki Kumagai and Zoltan Jurek and Weiqing Xu and Hironobu Fukuzawa and Koji Motomura and Denys Iablonskyi and Kiyonobu Nagaya and Shin-ichi Wada and Subhendu Mondal and Tetsuya Tachibana and Yuta Ito and Tsukasa Sakai and Kenji Matsunami and Toshiyuki Nishiyama and Takayuki Umemoto and Christophe Nicolas and Catalin Miron and Tadashi Togashi and Kanade Ogawa and Shigeki Owada and Kensuke Tono and Makina Yabashi and Sang-Kil Son and Beata Ziaja and Robin Santra and Kiyoshi Ueda},
    title={Real-time observation of disintegration processes within argon clusters ionized by a hard-x-ray pulse of moderate fluence},
    journal={Phys. Rev. A},
    volume={101},
    pages={023412},
    year={2020},
    keywords={XMDYN; Ar; cluster; SACLA; experiment; CFEL; DESY;},
    url={https://doi.org/10.1103/PhysRevA.101.023412},
    doi={10.1103/PhysRevA.101.023412}
}

@article{Jin21,
    author={Rui Jin and Malik Muhammad Abdullah and Zoltan Jurek and Robin Santra and Sang-Kil Son},
    title={Transient ionization potential depression in nonthermal dense plasmas at high x-ray intensity},
    journal={Phys. Rev. E},
    volume={103},
    pages={023203},
    year={2021},
    keywords={plasma; ionization potential depression; IPD; LTE; NLTE; nonthermal; nonequilibrium; Al; XATOM; XPOT; XMDYN; XFEL; CFEL; DESY;},
    url={https://doi.org/10.1103/PhysRevE.103.023203},
    doi={10.1103/PhysRevE.103.023203}
}

@article{Kumagai21,
    author={Yoshiaki Kumagai and Zoltan Jurek and Weiqing Xu and Vikrant Saxena and Hironobu Fukuzawa and Koji Motomura and Denys Iablonskyi and Kiyonobu Nagaya and Shin-ichi Wada and Yuta Ito and Tsukasa Takanashi and Shuhei Yamada and Yuta Sakakibara and Toshiyuki Nishiyama and Takayuki Umemoto and Minna Patanen and John D. Bozek and Ioan Dancus and Mihail Cernaianu and Catalin Miron and Tobias Bauer and Melanie Mucke and Edwin Kukk and Shigeki Owada and Tadashi Togashi and Kensuke Tono and Makina Yabashi and Sang-Kil Son and Beata Ziaja and Robin Santra and Kiyoshi Ueda},
    title={Suppression of thermal nanoplasma emission in clusters strongly ionized by hard x-rays},
    journal={J. Phys. B: At. Mol. Opt. Phys.},
    volume={54},
    pages={044001},
    year={2021},
    keywords={XMDYN; Kr; cluster; nanoplasma; SACLA; pump-probe; experiment; CFEL; DESY;},
    note={Special issue on Frontiers of AMO Science with FELs and Synchrotron Radiation},
    url={https://doi.org/10.1088/1361-6455/abd878},
    doi={10.1088/1361-6455/abd878}
}

@article{Boll22,
    author={Rebecca Boll and Julia M. Sch{\"a}fer and Beno{\^i}t Richard and Kilian Fehre and Gregor Kastirke and Zoltan Jurek and Markus S. Sch{\"o}ffler and Malik M. Abdullah and Nils Anders and Thomas M. Baumann and Sebastian Eckart and Benjamin Erk and Alberto {De Fanis} and Reinhard D{\"o}rner and Lutz Foucar and Sven Grundmann and Patrik Grychtol and Alexander Hartung and Max Hofmann and Markus Ilchen and Ludger Inhester and Christian Janke and Rui Jin and Max Kircher and Katharina Kubicek and Maksim Kunitski and Xiang Li and Tommaso Mazza and Severin Meister and Niklas Melzer and Jacobo Montano and Valerija Music and Giammarco Nalin and Yevheniy Ovcharenko and Christopher Passow and Andreas Pier and Nils Rennhack and Jonas Rist and Daniel E. Rivas and Daniel Rolles and Ilme Schlichting and Lothar Ph. H. Schmidt and Philipp Schmidt and Juliane Siebert and Nico Strenger and Daniel Trabert and Florian Trinter and Isabel Vela-Perez and Rene Wagner and Peter Walter and Miriam Weller and Pawel Ziolkowski and Sang-Kil Son and Artem Rudenko and Michael Meyer  and Robin Santra and Till Jahnke},
    title={X-ray multiphoton-induced Coulomb explosion images complex single molecules},
    journal={Nat. Phys.},
    volume={18},
    pages={423--428},
    year={2022},
    keywords={XMDYN; iodopyridine; Coulomb explosion; CEI; x-ray explosion dynamics; coincidence; experiment; SQS; European XFEL; CFEL; DESY},
    url={https://doi.org/10.1038/s41567-022-01507-0
    },
    doi={10.1038/s41567-022-01507-0
    }
}

@article{Jin22,
    author={Rui Jin and Zoltan Jurek and Robin Santra and Sang-Kil Son},
    title={Plasma environmental effects in the atomic structure for simulating x-ray free-electron-laser-heated solid-density matter},
    journal={Phys. Rev. E},
    volume={106},
    pages={015206},
    year={2022},
    keywords={plasma; ionization potential depression; IPD; LTE; NLTE; nonthermal; nonequilibrium; Al; XATOM; XPOT; XMDYN; XFEL; CFEL; DESY;},
    url={https://doi.org/10.1103/PhysRevE.106.015206},
    doi={10.1103/PhysRevE.106.015206}
}

@article{Wirok-Stoletow22,
    author={Stanislaw Wirok-Stoletow and Rui Jin and Daria Kolbasova and Sang-Kil Son and Andrew Aquila and Robin Santra},
    title={Nonsequential two-photon absorption in solid {Ge} irradiated by an intense x-ray free-electron-laser pulse},
    journal={Phys. Rev. A},
    volume={106},
    pages={023118},
    year={2022},
    keywords={TDCIS; XMDYN; two-photon; photoionization; Ge; plasma; CFEL; DESY; ;},
    url={https://doi.org/10.1103/PhysRevA.106.023118},
    doi={10.1103/PhysRevA.106.023118}
}